PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004921.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 338aa    MW: 38340 Da    PI: 5.4191
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004921.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.7e-153077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
      Pbr004921.1 30 KGLWSPEEDEKLMRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 77
                     678*******************************************97 PP

2Myb_DNA-binding506.7e-1683126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+++ +  lG++ W+ Ia++++ gRt++++k++w++
      Pbr004921.1  83 RGAFSPQEEELIIHFHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 126
                      89********************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3632577IPR017930Myb domain
SuperFamilySSF466892.77E-2828124IPR009057Homeodomain-like
SMARTSM007172.1E-112979IPR001005SANT/Myb domain
PfamPF002496.2E-143077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-243184IPR009057Homeodomain-like
CDDcd001671.66E-93377No hitNo description
PROSITE profilePS5129425.14478132IPR017930Myb domain
SMARTSM007172.4E-1582130IPR001005SANT/Myb domain
PfamPF002491.1E-1483126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2585133IPR009057Homeodomain-like
CDDcd001671.16E-1085125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MRKPESMEKD DVGGAKTISK KKMMMNKLRK GLWSPEEDEK LMRYMLTNGQ GCWSDIARNA  60
GLQRCGKSCR LRWINYLRPD LKRGAFSPQE EELIIHFHSI LGNRWSQIAA RLPGRTDNEI  120
KNFWNSALKK RLKNNIMSTS TSSPNDSDSS DPRDHVVGGT FMPMQDHDMM TMCNMDSSSS  180
SSTSMQAMAV NSNPLFNPFY MLDNRYDIAH ADDIVLSPTC FPHLPNLEVN QEHYGDYGNL  240
EGGHKMGLEG DLFLLPLESR SIENNPNGQL VADNISKKSI SNYHFHNSCF NNTEIGFKVD  300
EEEDMFGYEN NVGQGENVRV GEWDFEGFMQ DISSFLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-262113218128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9703578e-84AY970357.1 Prunus salicina clone PSX08 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364986.10.0PREDICTED: transcription factor MYB39-like
TrEMBLM5XMW61e-162M5XMW6_PRUPE; Uncharacterized protein
STRINGPOPTR_0009s06630.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.11e-73myb domain protein 83